Welcome to the New T3/Oat


This is the SANDBOX site for T3/Oat. The Sandbox can be used to test the addition of new data to T3/Oat. Data added to this site will be periodically cleared and reset to match the main production version of T3/Oat. For more information on adding data to the Sandbox and submitting it to the production site, see the submitting data sections below.


T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014 by the following investigators. For more information see the Oat Global website.

• Gabe Gusmini (PepsiCo), • Joe Lutz (General Mills), • Bruce Roskens (Grain Millers), • Nicholas Tinker (AAFC), • Kay Simmons, Jack Okamuro, Jose Costa, Jean-Luc Jannink, and Gerard Lazo (USDA-ARS)


  Leave Feedback

The New T3/Oat is the next evolution of The Triticeae Toolbox (T3). We are in the process of transitioning all of T3's data and tools to this new system. We encourage you to leave feedback about feature improvements, missing tools, and/or any ideas you may have to improve the site.




News

Scab Forum Presentation

Dec 9, 2019

The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.

Accessions Loaded

Dec 16, 2019

Accession entries have been created for all ~24,000 accessions that were in T3/Classic. Accessions have associated breeding programs, synonyms and GRIN ID numbers.



Explore T3/Oat

 Create Account

To view most of the data on T3/Oat, you'll first need to create a free account.


 Login

If you already have an account, login to get full access.

  Open Search Wizard

Use the Search Wizard to explore the database using various types of metadata.


Alternatively, you can search specifically for Accessions, Trials, Traits, Genoptyping Projects, or Markers




Submit Phenotype Data

To submit phenotype data to T3/Oat follow these three general steps:

Step 1: Create Upload Templates

Data submitted to T3/Oat should be in the format of the upload template for the data type you are submitting. View the detailed upload instructions for specific information on each data type.

Step 2: Add Data to Sandbox

Once you have your upload templates, you can test-load them on this Sandbox site to check for any errors.

Step 3: Submit Trial Data

If your trial data has been successfully added to the Sandbox you can submit your trials directly to the production site by clicking the Submit Trial button on the trial detail page.

If your data has not been added to the Sandbox or if you would prefer to submit your files directly to the production site, you can submit your individual upload templates or data files to us using the Phenotype Submission Form.


  Detailed Upload Instructions


User Guides

  Read Documentation

New to T3/Oat?

View the Documentation to learn about available features.





Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2015. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.

T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.