Welcome to the New T3/Oat
T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014 by the following investigators. For more information see the Oat Global website.
• Gabe Gusmini (PepsiCo), • Joe Lutz (General Mills), • Bruce Roskens (Grain Millers), • Nicholas Tinker (AAFC), • Kay Simmons, Jack Okamuro, Jose Costa, Jean-Luc Jannink, and Gerard Lazo (USDA-ARS)
The New T3/Oat is the next evolution of The Triticeae Toolbox (T3). We are in the process of transitioning all of T3's data and tools to this new system. We encourage you to leave feedback about feature improvements, missing tools, and/or any ideas you may have to improve the site.
PepsiCo Oat Genome
June 23, 2020
Scab Forum Presentation
Dec 9, 2019
The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.
Dec 16, 2019
Accession entries have been created for all ~24,000 accessions that were in T3/Classic. Accessions have associated breeding programs, synonyms and GRIN ID numbers.
To view most of the data on T3/Oat, you'll first need to create a free account.
If you already have an account, login to get full access.
Use the Search Wizard to explore the database using various types of metadata.
Alternatively, you can search specifically for Accessions, Trials, Traits, Genoptyping Projects, or Markers
Submit Phenotype Data
To submit phenotype data to T3/Oat follow these three general steps:
Step 1: Create Upload Templates
Data submitted to T3/Oat should be in the format of the upload template for the data type you are submitting. View the detailed upload instructions for specific information on each data type.
Step 2: Add Data to Sandbox
Once you have your upload templates, you can test-load them on this Sandbox site to check for any errors.
Step 3: Submit Trial Data
If your trial data has been successfully added to the Sandbox you can submit your trials directly to the production site by clicking the Submit Trial button on the trial detail page.
If your data has not been added to the Sandbox or if you would prefer to submit your files directly to the production site, you can submit your individual upload templates or data files to us using the Phenotype Submission Form.
Detailed Upload Instructions
User GuidesRead Documentation
New to T3/Oat?
View the Documentation to learn about available features.
Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2015. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.
T3/Oat Data Usage Policy
In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3/Oat available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.
More information is available on the data usage policy page.
I agree to the Data Usage Policy as specified in Toronto Statement.